Scan your Claude Code configuration (.claude/ directory) for security vulnerabilities, misconfigurations, and injection risks using AgentShield. Checks CLAUDE.md, settings.json, MCP servers, hooks, and agent definitions.

Security Scan Skill

Audit your Claude Code configuration for security issues using AgentShield.

When to Activate

  • Setting up a new Claude Code project
  • After modifying .claude/settings.json, CLAUDE.md, or MCP configs
  • Before committing configuration changes
  • When onboarding to a new repository with existing Claude Code configs
  • Periodic security hygiene checks

What It Scans

FileChecks
CLAUDE.mdHardcoded secrets, auto-run instructions, prompt injection patterns
settings.jsonOverly permissive allow lists, missing deny lists, dangerous bypass flags
mcp.jsonRisky MCP servers, hardcoded env secrets, npx supply chain risks
hooks/Command injection via interpolation, data exfiltration, silent error suppression
agents/*.mdUnrestricted tool access, prompt injection surface, missing model specs

Prerequisites

AgentShield must be installed. Check and install if needed:

1# Check if installed
2npx ecc-agentshield --version
3
4# Install globally (recommended)
5npm install -g ecc-agentshield
6
7# Or run directly via npx (no install needed)
8npx ecc-agentshield scan .

Usage

Basic Scan

Run against the current project's .claude/ directory:

1# Scan current project
2npx ecc-agentshield scan
3
4# Scan a specific path
5npx ecc-agentshield scan --path /path/to/.claude
6
7# Scan with minimum severity filter
8npx ecc-agentshield scan --min-severity medium

Output Formats

1# Terminal output (default) — colored report with grade
2npx ecc-agentshield scan
3
4# JSON — for CI/CD integration
5npx ecc-agentshield scan --format json
6
7# Markdown — for documentation
8npx ecc-agentshield scan --format markdown
9
10# HTML — self-contained dark-theme report
11npx ecc-agentshield scan --format html > security-report.html

Auto-Fix

Apply safe fixes automatically (only fixes marked as auto-fixable):

1npx ecc-agentshield scan --fix

This will:

  • Replace hardcoded secrets with environment variable references
  • Tighten wildcard permissions to scoped alternatives
  • Never modify manual-only suggestions

Opus 4.6 Deep Analysis

Run the adversarial three-agent pipeline for deeper analysis:

1# Requires ANTHROPIC_API_KEY
2export ANTHROPIC_API_KEY=your-key
3npx ecc-agentshield scan --opus --stream

This runs:

  1. Attacker (Red Team) — finds attack vectors
  2. Defender (Blue Team) — recommends hardening
  3. Auditor (Final Verdict) — synthesizes both perspectives

Initialize Secure Config

Scaffold a new secure .claude/ configuration from scratch:

1npx ecc-agentshield init

Creates:

  • settings.json with scoped permissions and deny list
  • CLAUDE.md with security best practices
  • mcp.json placeholder

GitHub Action

Add to your CI pipeline:

1- uses: affaan-m/agentshield@v1
2  with:
3    path: "."
4    min-severity: "medium"
5    fail-on-findings: true

Severity Levels

GradeScoreMeaning
A90-100Secure configuration
B75-89Minor issues
C60-74Needs attention
D40-59Significant risks
F0-39Critical vulnerabilities

Interpreting Results

Critical Findings (fix immediately)

  • Hardcoded API keys or tokens in config files
  • Bash(*) in the allow list (unrestricted shell access)
  • Command injection in hooks via ${file} interpolation
  • Shell-running MCP servers

High Findings (fix before production)

  • Auto-run instructions in CLAUDE.md (prompt injection vector)
  • Missing deny lists in permissions
  • Agents with unnecessary Bash access
  • Silent error suppression in hooks (2>/dev/null, || true)
  • Missing PreToolUse security hooks
  • npx -y auto-install in MCP server configs

Info Findings (awareness)

  • Missing descriptions on MCP servers
  • Prohibitive instructions correctly flagged as good practice